That's not normal. Typically you should see only a few milliohms variation whether rotated in-slot or between slots. The MC3000 should serve better for tracking health because - unlike the AC 1kHz test - it will incorporate some of the resistance components with longer time constants (but not all of them since the test duration is too short).
It would be interesting to see how the AC test compares to the MC3K pulse test on a wide variety of cells. For example, what's the largest difference between the two that you've encountered?
When I get back home tonight, I will do an extensive test with the MC3 and the SM8124A on all my cells, which is not that much really, just 21 at the moment and another 12 on the way and will post back here the largest difference between the two readings. Going to test all my 26650's as well and see if everyone has a stable reading in the mc3 and what's going on with the 18650's why they don't.